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Colorado Peer Reviewed Publications

  • Williams, P. J., W. L. Kendall, and M. B. Hooten. 2019.
    Choosing ecological models using multi-objective optimization. Ecological Modelling 404:21-26.
  • Williams, P.J., M.B. Hooten, G.G. Esslinger, J.N. Womble, J. Bodkin, and M.R. Bower. (2019). The rise of an apex predator following deglaciation. Diversity and Distributions, 25: 895-908.
  • Peterson, E.E., E.M. Hanks, M.B. Hooten, J.M. Ver Hoef, and M.-J. Fortin. (2019). Spatially structured statistical network models for landscape genetics. Ecological Monographs, 89: e01355.
  • Christianson, K.R., B.M. Johnson, M.B. Hooten, and J.J. Roberts. (2019). Estimating lake-climate responses from sparse data: An application to high elevation lakes. Limnology and Oceanography, 64: 1371-1385.
  • Hooten, M.B. and D.S. Johnson. (2019). Modeling Animal Movement. Gelfand, A.E., M. Fuentes, and J.A. Hoeting (eds). In Handbook of Environmental and Ecological Statistics. Chapman & Hall/CRC.
  • Ketz, A.C., T.L. Johnson, M.B. Hooten, and N.T. Hobbs. (2019). A hierarchical Bayesian approach for handling missing classification data. Ecology and Evolution, 9: 3130-3140.
  • Hooten, M.B., H.R. Scharf, and J.M. Morales. (2019). Running on empty: Recharge dynamics from animal movement data. Ecology Letters, 22: 377-389.
  • Kendall, W. L., S. Stapleton, G. C. White, J. I. Richardson, K. N. Pearson, and P. Mason. 2019. A multistate open robust design: population dynamics, reproductive effort, and phenology of sea turtles from tagging data. Ecological Monographs 89: e01329.
  • Pejchar, L., M.B. Hooten, and G.Daily. (2018). Unique effects of large-scale forest restoration on native and exotic birds in Hawaii. Diversity and Distribution, 24: 811-819.
  • Williams, P.J., M.B. Hooten, J.N. Womble, G.G. Esslinger, and M.R. Bower. (2018). Monitoring dynamic spatio-temporal ecological processes optimally. Ecology, 99: 524-535.
  • Krzystan, A. M., T. A. Gowan, W. L. Kendall, J. Martin, J. G. Ortega-Ortiz, K. Jackson, A. R. Knowlton, P. Naessig, M. Zani, D. W. Schulte, and C. R. Taylor. 2018. Characterizing residence patterns of North Atlantic right whales in the southeastern U.S. with a multistate open robust design model. Endangered Species Research 36:279-295 DOI: https://doi.org/10.3354/esr00902.
  • Zhao, Q*., G. Scott Boomer, and W. L. Kendall. 2018. The non-linear, interactive effects of population density and climate drive the geographical patterns of waterfowl survival. Biological Conservation 221:1-9.
  • Itter, M.S., A.O. Finley, M.B. Hooten, P.E. Higuera, J.R. Marlon, R. Kelly, and J.S. McLachlan. (2018). A model-based approach to wildland fire reconstruction using sediment charcoal records. Environmetrics, 22: e2450.
  • Gerber, B. D., and W. L. Kendall. Adaptive management of animal populations with significant unknowns and uncertainties: a case study. Ecological Applications 28:1325-1341, https://doi.org/10.1002/eap.1734.
  • Ver Hoef, J.M., E.E. Peterson, M.B. Hooten, E.M. Hanks, and M-J. Fortin. (2018). Spatial autoregressive models for statistical inference from ecological data. Ecological Monographs, 88: 36-59.
  • Scharf, H.R., M.B. Hooten, D.S. Johnson, and J. Durban. (2018). Process convolution approaches for modeling interacting trajectories. Environmetrics, 29: e2487.
  • Buderman, F.E., M.B. Hooten, J. Ivan, and T. Shenk. (2018). Large-scale movement behavior in a reintroduced predator population. Ecography, 41: 126-139.
  • Ketz, A.C., T.L. Johnson, R.J. Monello, J. Mack, J.L. George, B.R. Kraft, M.A. Wild, M.B. Hooten, and N.T. Hobbs. (2018). Estimating abundance of an open population with an N-mixture model using auxiliary data on animal movements. Ecological Applications, 28: 816-825.
  • Gerber, B.D., M.B. Hooten, C.P. Peck, M.B. Rice, J.H. Gammonley, A.D. Apa, and A.J. Davis. (2018). Accounting for location uncertainty in azimuthal telemetry data improves ecological inference. Movement Ecology, 6: 14.
  • Hooten, M.B., H.R. Scharf, T.J. Hefley, A. Pearse, and M. Weegman. (2018). Animal movement models for migratory individuals and groups. Methods in Ecology and Evolution, 9: 1692-1705.
  • Conn, P.B., D.S. Johnson, P.J. Williams, S. Melin, and M.B. Hooten. (2018). A guide to Bayesian model checking for ecologists. Ecological Monographs, 88: 526-542.
  • Buderman, F.E., M.B. Hooten, M.W. Alldredge, E.M. Hanks, and J.S. Ivan. (2018). Time-varying predatory behavior is primary predictor of fine-scale movement of wildland-urban cougars. Movement Ecology, 6: 22.
  • Hooten, M.B. and D.S. Johnson. (2017). Basis function models for animal movement. Journal of the American Statistical Association, 112: 578-589.
  • Steger, C., B. Butt, and M.B. Hooten. (2017). Safari Science: Assessing the reliability of citizen science data for wildlife surveys. Journal of Applied Ecology, 54: 2053-2062.
  • Hefley, T.J., M.B. Hooten, R.E. Russell, D.P. Walsh, and J. Powell. (2017). When mechanism matters: Forecasting the spread of disease using ecological diffusion. Ecology Letters, 20: 640-650.
  • Hanks, E.M., D.S. Johnson, and M.B. Hooten. (2017). Reflected stochastic differential equation models for constrained animal movement. Journal of Agricultural, Biological, and Environmental Statistics, 22: 353-372.
  • Fraser, G.S., D.L. Winkelman, K.R. Bestgen, and K.G. Thompson. Submitted. Tributary Use by Flannelmouth and Bluehead Suckers in the Upper Colorado River Basin. Transactions of the American Fisheries Society
  • A. Jastrow, D.A. Gordon, K.M. Auger, E.C. Punska, K.F. Arcaro, K. Keteles, D.L. Winkelman, D. Lattier, A. Biales, J.L. Lazorchak. Tools to Minimize Inter-Laboratory Variability in Vitellogenin Gene Expression Monitoring Programs
  • Williams, P.J., M.B. Hooten, J.N. Womble, G.G. Esslinger, M.R. Bower, and T.J. Hefley. (2017). Estimating occupancy and abundance using aerial images with imperfect detection. Methods in Ecology and Evolution, 8: 1679-1689.
  • Tredennick, A.T., M.B. Hooten, and P.B. Adler. (2017). Do we need demographic data to forecast the state of plant populations? Methods in Ecology and Evolution, 8: 541-551.
  • Scharf, H.R., M.B. Hooten, and D.S. Johnson. (2017). Imputation approaches for animal movement modeling. Journal of Agricultural, Biological, and Environmental Statistics, 22: 335-352.
  • Hefley, T.J., K.M. Broms, B.M. Brost, F.E. Buderman, S.L. Kay, H.R. Scharf, J.R. Tipton, P.J. Williams, and M.B. Hooten. (2017). The basis function approach to modeling dependent ecological data. Ecology, 98: 632-646.
  • Williams, P.J., M.B. Hooten, J.N. Womble, G.G. Esslinger, M.R. Bower, and T.J. Hefley. (2017). An integrated data model to estimate spatio-temporal occupancy, abundance, and colonization dynamics. Ecology, 98: 328-336.
  • Hefley, T.J., M.B. Hooten, E.M. Hanks, R.E. Russell, and D.P. Walsh. (2017). Dynamic spatio-temporal models for spatial data. Spatial Statistics, 20: 206-220.
  • Small, R.J., B.M. Brost, M.B. Hooten, M. Castellote, and J. Mondragon. (2017). Anthropogenic noise in Cook Inlet beluga critical habitat: Potential for spatial displacement. Endangered Species Research, 32: 43-57.
  • Hefley, T.J., M.B. Hooten, E.M. Hanks, R.E. Russell, and D.P. Walsh. (2017). The Bayesian spatial group lasso. Journal of Agricultural, Biological, and Environmental Statistics, 22: 42-59.
  • Hooten, M.B., D.S. Johnson, B.T. McClintock, and J.M. Morales. (2017). Animal Movement: Statistical Models for Telemetry Data. Chapman and HallCRC.
  • Brost, B.M., M.B. Hooten, and R.J. Small. (2017). Leveraging constraints and biotelemetry data to pinpoint repetitively used spatial features. Ecology, 98: 12-20.
  • Tipton, J., M.B. Hooten, and S. Goring. (2017). Reconstruction of spatio-temporal temperature from sparse historical records using robust probabilistic principal component regression. Advances in Statistical Climatology, Meteorology and Oceanography, 3: 1-16.
  • Hefley, T.J., B.M. Brost, and M.B. Hooten. (2017). Bias correction of bounded location errors in presence-only data. Methods in Ecology and Evolution, 8: 1566-1573.
  • Gerber, B. D., and W. L. Kendall. 2017. Evaluating and improving count-based population inference: A case study from 31 years of monitoring sandhill cranes. The Condor: Ornithological Applications 119:191-206
  • Lepak, J.M., M.B. Hooten, C.A. Eagles-Smith, M.A. Lutz, M.T. Tate, J.T. Ackerman, J.J. Willacker Jr., D.C. Evers, J. Davis, C.F. Pritz, J.G. Wiener. (2016). Assessing mercury concentrations in fish across western Canada and the United States: potential health risks to fish and humans. Science of the Total Environment, 571: 342-354.
  • Scharf, H.R., M.B. Hooten, B.K. Fosdick, D.S. Johnson, J.M. London, and J.W. Durban. (2016). Dynamic social networks based on movement. Annals of Applied Statistics,10: 2182-2202.
  • Tredennick, A.T., M.B. Hooten, C.L. Aldridge, C.G. Homer, A. Kleinhesselink, and P.B. Adler. (2016).
    Forecasting climate change impacts on plant populations over large spatial extents. Ecosphere,7: e01525.
  • Meredith, C.S., P. Budy, and M. Hooten, and M. O. Prates. 2016. Assessing abiotic conditions influencing the longitudinal distribution of exotic brown trout in a mountain stream: a spatially-explicit modeling approach. Biological Invasions. DOI 10.1007/s10530-016-1322-z. USGS IP-069503  | Abstract | 
  • Pearson, K. N., W. L. Kendall, D. L. Winkelman, and W. R. Persons. Tradeoffs between physical captures and PIT tag antenna array detections: a case study for the Lower Colorado River Basin population of humpback chub (Gila cypha). Fisheries Research 183:263-274..
  • Paschoal, A. M. O., R. L. Massara, L. L. Bailey, W. L. Kendall, P. F Doherty, Jr., A. Hirsch, A G. Chiarello, and A. P. Paglia. Use of Atlantic forest protected areas by free-randing dogs: estimating abundance and persistence of use. Ecosphere 7 (Article e01480):1-15.
  • Williams, P. J., and W. L. Kendall. A guide to multi-objective optimization for ecological problems with an application to cackling goose management. Ecological Modelling, in press.
  • Reichert, B. E., W. L. Kendall, R. J. Fletcher, Jr., and W. M. Kitchens. Spatio-temporal variation in age structure and abundance of the endangered snail kite: a declining, aging population in South Florida. Plos One DOI:10.1371/journal.pone.0162690: 1-18.
  • Ruiz-Gutierrez, V., M.B. Hooten, and E.H. Campbell Grant. (2016). Uncertainty in biological monitoring: a framework for data collection and analysis to account for multiple sources of sampling bias. Methods in Ecology and Evolution, 7: 900-909.
  • Gerber, B. D., and W. L. Kendall. 2016. Considering transient population dynamics in the conservation of slow life-history species: An application to the sandhill crane. Biological Conservation 200:228-239.
  • Hanks, E.M., M.B. Hooten, S.A. Knick, S.J. Oyler-McCance, J.A. Ficke, T.B. Cross, and M.K. Schwartz. (2016). Latent spatial models and sampling design for landscape genetics. Annals of Applied Statistics, 10: 1041-1062.
  • Schwindt, A.R. and D.L. Winkelman. Stochastic population growth rate is reduced by an environmental estrogen and is highly sensitive to fecundity and juvenile survival of a short-lived fish
  • Ruiz-Gutierrez, V., W. L. Kendall, J. F. Saracco, and G. C. White. 2016. Modeling dynamics for resident and transient individuals: a case study using uncertain state models for migratory birds. Journal of Applied Ecology, DOI: 10.1111/1365-2664.12655
  • Buderman, F.E., M.B. Hooten, J.S. Ivan, and T.M. Shenk. 2016. A functional model for characterizing long distance movement behavior. Methods in Ecology and Evolution 7(3): 264–273.
  • Tipton, J., M.B. Hooten, N. Pederson, M. Tingley, and D. Bishop. (2016). Reconstruction of late Holocene climate based on tree growth and mechanistic hierarchical models. Environmetrics, 27: 42-54.
  • Williams, P.J. and M.B. Hooten. (2016). Combining statistical inference and decisions in ecology. Ecological Applications, 26: 1930-1942.
  • Broms, K.M., M.B. Hooten, and R.M. Fitzpatrick. (2016). Model selection and assessment for multi­species occupancy models. Ecology, 97: 1759-1770.
  • Hefley, T.J. and M.B. Hooten. (2016). Hierarchical species distribution models. Current Landscape
    Ecology Reports, 1: 87-97.
  • Wikle, C.K., W.B. Leeds, and M.B. Hooten. (2016). Models for ecological models: Ocean primary productivity. Chance, 29 (2): 23.
  • Hefley, T.J., M.B. Hooten, J.M. Drake, R.E. Russell, and D.P. Walsh. (2016). When can the cause of a population decline be determined? Ecology Letters, 19: 1353-1362.
  • Hooten, M.B., F.E. Buderman, B.M. Brost, E.M. Hanks, and J.S. Ivan. (2016). Hierarchical animal movement models for population-level inference. Environmetrics, 27: 322-333.
  • Broms, K.M., M.B. Hooten, D.S. Johnson, L.L. Conquest, and R. Altwegg. (2016). Dynamic occupancy models for explicit colonization processes. Ecology, 97: 194-204.
  • Northrup, J.M., C.R. Anderson, M.B. Hooten, and G. Wittemyer. (2016). Movement reveals scale-dependence in habitat selection of a large ungulate. Ecological Applications, 26: 2746-2757.
  • Davis, A.J., M.B. Hooten, R.S. Miller, M. Farnsworth, J. Lewis, M. Moxcey, and K.M. Pepin. (2016) Inferring invasive species abundance using removal data from management actions. Ecological Applications, 26: 2339-2346.
  • Crimmins, S. M., P. C. McKann, J. R. Robb, J. P. Lewis, T. Vanosdol, B. A. Walker, P. J. Williams, and W. E. Thogmartin. 2016. Factors affecting Henslow's sparrow (Ammodramus henslowii) nest survival in southern Indiana. Wilson Journal of Ornithology 128:1:10.
  • Vigil, E., M. K. C. Christianson, J. M. Lepak, and P. J. Williams. 2016. Temperature effets on hatching and viability of juvenile gill lice; Salmincola californiensis. Journal of Fish Diseases. Early View
  • Garcia-Cruz, M. A., M. Lampo, C. L. Penaloza, W. L. Kendall, G. Sole, and K. M. Rodriguez-Clark. 2015.Population trends and survival of nesting green sea turtles (Chelonia mydas) on Aves Island, Venezuela. Endangered Species Research 29:101-116.
  • Hobbs, N.T., C. Geremia, J. Treanor, R. Wallen, P.J. White, M.B. Hooten, and J.C. Rhyan. (2015). State-space modeling to support adaptive management of brucellosis in the Yellowstone bison population. Ecological Monographs, 85: 525-556.
  • Pearson, K. N., W. L. Kendall, D. L. Winkelman, and W. R. Persons. 2015. Evidence for skipped spawning in the endangered humpback chub (Gila cypha) with implications for demographic parameter estimates. Fisheries Research 170:50-59
  • Ross, B.E., M.B. Hooten, J-M. DeVink, and D.N. Koons. (2015). Combined effects of climate, predation, and density dependence on Greater and Lesser Scaup population dynamics. Ecological Applications, 25: 1606-1617.
  • Schmelter, M.L., P. Wilcock, M.B. Hooten, and D.K. Stevens. (2015). Multi-fraction Bayesian sediment transport model. Journal of Marine Science and Engineering, 3: 1066-1092.
  • Chambert, T., W. L. Kendall, J. E. Hines, J. D. Nichols, P. Pedrini, J. H. Waddle, G. Tavecchia, S. C. Walls, and S. Tenan. 2015. An open dynamic occupancy model to estimate shifts in the distribution and phenology of imperfectly detectable species. Methods in Ecology and Evolution 6:638-647
  • Gerber, B. D., W. L. Kendall, M. B. Hooten, J. A. Dubovsky, and R. C. Drewien. 2015. Optimal population prediction of sandhill crane recruitment based on climate-mediated habitat limitations. Journal of Animal Ecology, DOI: 10.1111/1365-2656.12370
  • Fetherman, E.R., D.L. Winkelman, L.L. Bailey, G.J Schisler, and K. Davies. Brown Trout removal effects on short-term survival and movement of Myxobolus cerebralis-resistant rainbow trout. Transactions of the American Fisheries Society 144:610-626. doi=10.1080/00028487.2015.1007166  | Download  |  Publisher Website | 
  • Hanks, E.M., M.B. Hooten, and M. Alldredge. (2015). Continuous-time discrete-space models for animal movement. Annals of Applied Statistics, 9: 145-165.
  • Hooten, M.B. and N.T. Hobbs. (2015). A guide to Bayesian model selection for ecologists. Ecological Monographs. 85: 3-28.
  • Conn, P.B., Johnson, D.S., J.M. Ver Hoef, M.B. Hooten, J.M. London, and P.L. Boveng. (2015). Using spatio-temporal models to estimate animal abundance and infer ecological dynamics from survey counts. Ecological Monographs. 85: 235-252.
  • Broms, K.M., M.B. Hooten, and R. Fitzpatrick. (2015). Accounting for imperfect detection in Hill numbers for biodiversity studies. Methods in Ecology and Evolution. 6: 99-108.
  • Hanks, E.M., E. Schliep, M.B. Hooten, and J.A. Hoeting. (2015). Restricted spatial regression in practice: Geostatistical models, confounding, and robustness under model misspecification. Environmetrics. 26: 243-254.
  • Hefley, T.J. and M.B. Hooten. (2015). On the existence of maximum likelihood estimates for presence-only data. Methods in Ecology and Evolution, 6: 648-655.
  • Brost, B.M., M.B. Hooten, E.M. Hanks, and R.J. Small. (2015). Animal movement constraints improve resource selection inference in the presence of telemetry error. Ecology, 96: 2590-2597.
  • Raiho, A., M.B. Hooten, S. Bates, and N.T. Hobbs. (2015). Forecasting the effects of fertility control on overabundant ungulates: White-tailed deer in the National Capital region. PLoS One, 10: e0143122.
  • Hobbs, N.T. and M.B. Hooten. (2015). Bayesian Models: A Statistical Primer for Ecologists. Princeton University Press.
  • Lyons, J. E., W. L. Kendall, J. A. Royle, S. J. Converse, B. A. Andres, and J. B. Buchanan. 2015. Population size and stopover duration estimation using mark-resight data and Bayesian analysis of a superpopulation model. Biometrics DOI: 10.1111/biom.12393.
  • Davis, A.J., M.B. Hooten, M.L. Phillips, and P.F. Doherty. (2014). An integrated modeling approach to estimating Gunnison sage-grouse population dynamics: Combining index and demographic data. Ecology and Evolution, 4: 4247-4257.
  • McClintock, B.T., D.S. Johnson, M.B. Hooten, J.M. Ver Hoef, and J.M. Morales. (2014). When to be discrete: the importance of time formulation in understanding animal movement. Movement Ecology, 2: 21.
  • Stoelting, R. E., R. J. Gutiérrez, W. L. Kendall, and M. Z. Peery. 2015. Life history trade-offs and reproductive cycles in Spotted Owls? The Auk: Ornitholigical Advances 132:46-64.
  • Stauffer, G. E., J. J. Rotella, R. A. Garrott, and W. L. Kendall. 2014. Environmental correlates of temporary emigration for female Weddell seals and consequences for recruitment. Ecology 95:2526-2536.
  • Fetherman, E.R., B.W. Avila, and D.L. Winkelman. Raft and Floating RFID Antenna Systems for Detecting PIT-tagged Fish in Rivers. North American Journal of Fisheries Management 34:1065-1077.  | Download  |  Publisher Website | 
  • Breton, A.R., D.L. Winkelman, J.A. Hawkins, and K.R. Bestgen. Population trends of smallmouth bass in the upper Colorado River basin with an evaluation of removal effects.
  • Winkelman, D.L. and A.R. Schwindt. A common wastewater contaminant can disrupt fish survival, reproduction, and population dynamics. Colorado Water Newsletter
  • Peñaloza, C. L., W. L. Kendall, and C. A. Langtimm. Reducing bias in survival under non-random temporary emigration. Ecological Applications 24:1155-1166.
  • Schwindt, AR and DL Winkelman, K Keteles, M. Murphy, A.M. Vajda. 2014. An Environmental oestrogen disrupts fish population dynamics through direct and transgenerational effects on survival and fecundity. Journal of Applied Ecology 51:582-591.  | Download  | 
  • Fetherman, E.R., D.L. Winkelman, M.R. Baerwald, and G.J. Schisler. 2014. Survival and reproduction of Myxobolus cerebralis-resistant rainbow trout introduced to the Colorado River and increased resistance of age-0 progeny. PLoS ONE 9(5):e96954. doi:10.1371/journal.pone.0096954.  | Download  | 
  • Hooten, M.B., E.M. Hanks, D.S. Johnson, and M.W. Alldredge. (2014). Temporal variation and scale in movement-based resource selection functions. Statistical Methodology, 17: 82-98.
  • Devineaux, O., W. L. Kendall, P. F. Doherty, Jr., T. M. Shenk, G. C. White, P. M. Lukacs, and K. P. Burnham. 2014. Increased flexibility for modeling telemetry and nest-survival data using the multistate framework. Journal of Wildlife Management 78:224-230.
  • Gerber, B. D., P. J. Williams, L. L. Bailey. 2014. Primates and Cameras: Non-invasive sampling to make population-level inferences while accounting for imperfect detection. International Journal of Primatology 35:841--858.
  • Williams, P.J., S. A. Whitmore, R.J. Gutierrez. 2014. Use of private lands for foraging by California spotted owls in the central Sierra Nevada. Widlife Society Bulletin 35:705--709.  | Abstract | 
  • Johnson, D.S., M.B. Hooten, and C.E. Kuhn. (2013). Estimating animal resource selection from telemetry data using point process models. Journal of Animal Ecology, 82: 1155-1164.
  • Breton, A., J. Hawkins, and D.L. Winkelman. 2013. Correcting length-frequency distributions for imperfect detection. North American Journal of Fisheries Management 33:1156-1165.  | Download  | 
  • Williams, P.J., N. J. Engbrecht, J. R. Robb, V. C. K. Terrell, and M. J. Lannoo. 2013. Surveying a threatened amphibian species through a narrow detection window. Copiea 2013(3):553-562.
  • Hooten, M.B., M.J. Garlick, and J.A. Powell. (2013). Computationally efficient statistical differential equation modeling using homogenization. Journal of Agricultural, Biological and Environmental Statistics, 18: 405-428.
  • Kendall, W. L., R. J. Barker, G. C. White, M.S. Lindberg, C. A. Langtimm, and C. L. Peñaloza. 2013. Combining tag recovery, auxiliary observations, and robust design data to estimate demographic parameters from marked individuals. Methods in Ecology and Evolution 4:828-835.  | Abstract | 
  • N Engbrecht, M Lannoo, P Williams, J Robb, T Gerardot, D Karns, M Lodato. 2013. Is There Hope for the Hoosier Frog? An Update on the Status of Crawfish Frogs (Lithobates areolatus) in Indiana, with Recommendations for their Conservation. Proceedings of the Indiana Academy of Science 121 (2), 147-157
  • Péron, G., J. E. Hines, J. D. Nichols, W. L. Kendall, K. A. Peters, and D. S. Mezrahi. 2013. Age-specific superpopulation capture-recapture models for the estimation of the number of bird and bat fatalities at wind-power plants. Journal of Applied Ecology 50:902-911.
  • Nehring, B.R., B. Hancock, M. Catanese, M.E.T. Stinson, D. Winkelman, J. Wood, and J. Epp. 2013. Reduced Myxobolus cerebralis actinospore production in a Colorado reservior may be linked to changes in Tubifex tubifex population structure.
  • Northrup, J.M., M.B. Hooten, C.R. Anderson, and G. Wittemyer. (2013). Practical guidance on characterizing availability in resource selection functions under a use-availability design. Ecology, 94: 1456-1463. Ecology, In Press.
  • Hooten, M.B., E.M. Hanks, D.S. Johnson, and M.W. Alldredge. (2013). Reconciling resource utilization and resource selection functions. Journal of Animal Ecology, 82: 1146-1154.
  • Johnson, D.S., P.B. Conn, M.B. Hooten, J. Ray, and B. Pond. (2013). Spatial occupancy models for large data sets. Ecology, 94: 801-808.
  • Hanks, E.M. and M.B. Hooten. (2013). Circuit theory and model-based inference for landscape connectivity. Journal of the American Statistical Association, 108: 22-33.
  • Roberts, J.J., K.D. Fausch, D.P. Peterson, and M.B. Hooten. (2013). Fragmentation and thermal risks from climate change interact to affect persistence of native trout in the Colorado River basin. Global Change Biology, 19: 1383-1398.
  • Kendall, W. L., J. E. Hines, J. D. Nichols, and E. H. Grant. 2013. Relaxing the closure assumption in single-season occupancy models: staggered arrival and departure times. Ecology 94(3):610-617.
  • Cruz, S.M., M.B. Hooten, K.P. Huyvaert, C. Proano, D.J. Anderson, J. Fox, and M. Wikelski. (2013). At–sea behavior varies with lunar phase in a nocturnal pelagic seabird, the swallow-tailed gull. PLoS One, 8: e56889.
  • Green, A.W., M.B. Hooten, E.H.C. Grant, and L.L. Bailey. (2013). Evaluating breeding and metamorph occupancy and vernal pool management effects for wood frogs using a hierarchical model. Journal of Applied Ecology, 50: 1116-1123.
  • Fetherman, E. R., D. L. Winkelman, G. J. Schisler, and M.F. Antolin. 2012. Genetic basis of differences in myxospore count between whirling disease resistant and susceptible strains of rainbow trout. Diseases of Aquatic Organisms 102:97-106
  • Williams, P. J., J. R. Robb, and D. R. Karns. 2012. Habitat selection by crawfish frogs (Lithobates areolatus) in a large mixed grassland/forest habitat. Journal of Herpetology 46:682--688
  • Ross, B.E., M.B. Hooten, and D.N. Koons. (2012). An accessible method for implementing hierarchical models with spatio-temporal abundance data. PLoS One, 7: e49395.
  • Lepak, J.M., C.N. Cathcart, and M.B. Hooten. (2012). Otolith weight as a predictor of age in kokanee salmon (Oncorhynchus nerka) from four Colorado reservoirs. Canadian Journal of Fisheries and Aquatic Sciences, 69: 1569-1575.
  • Lepak, J.M., M.B. Hooten, and B.M. Johnson. (2012). The influence of marine subsidies on diet, growth, and Hg concentrations of freshwater sport fish: tertiary impacts on fisheries and human health. Ecotoxicology, 21: 1878-1888.
  • Reichert, B. E., C. E. Cattau, R. J. Fletcher, Jr., W. L. Kendall, and W. E. Kitchens. 2012. Extreme weather and experience influence reproduction in an endangered bird. Ecology 93:2580-2589.
  • Kendall, W. L. and C. T. Moore. 2012. Maximizing the utility of monitoring to the adaptive management of natural resources. Pages 74-98 in R. A. Gitzen, J. J. Millspaugh, A. B. Cooper, and D. S. Licht, editors. Design and analysis of long-term ecological monitoring studies. Cambridge University Press, Cambridge, UK.
  • Gerber, B.D., Karpanty, S.M., Randrianantenaina, J., 2012. The impact of forest logging and fragmentation on carnivore species composition, density and occupancy in Madagascar's rainforests. Oryx 46, 414-422.  | Abstract |  Download  |  Publisher Website | 
  • Gerber, B.D., Karpanty, S.M., Randrianantenaina, J., 2012. Activity patterns of carnivores in the rain forests of Madagascar: implications for species coexistence. Journal of Mammalogy 93, 667-676.  | Abstract |  Download  |  Publisher Website | 
  • Williams, P. J., J. R. Robb, and D. R. Karns. 2012. Occupancy dynamics of breeding crawfish frogs in southeastern Indiana. Wildlife Society Bulletin 36:350--357.
  • Hooten, M.B., B.E. Ross, and C.K. Wikle. (2012). Optimal spatio-temporal monitoring designs for characterizing population trends. Gitzen, R.A., J.J. Millspaugh, A.B. Cooper, and D.S. Licht (eds). In: Design and Analysis of Long-Term Ecological Monitoring Studies. Cambridge University Press.
  • Kendall, W. L., G. C. White, J. E. Hines, C. A. Langtimm, and J. Yoshizaki. 2012. Estimating parameters of hidden Markov models based on marked individuals: use of robust design data. Ecology 93:913-920.
  • Wolfe, B.A., B.M. Johnson, A.R. Breton, P.J. Martinez, and D.L. Winkelman. In press. Origins and movements of invasive piscivores determined from the strontium isotope (87Sr/86Sr) ratio of otoliths. Canadian Journal of Fisheries and Aquatic Sciences.  | Download  | 
  • Williams, P. J., J. R. Robb, R. H. Kappler, T. E Piening, and D. R. Karns. 2012. Intraspecific density dependence in larval development of the crawfish frog, Lithobates areolatus. Herpetological Review 43:36-38.
  • Schaub, M. and W. L. Kendall (eds.). 2012. Proceedings "Euring Analytical Conference 2009". Journal of Ornithology 152 (Supplement 2).
  • Heemeyer, J. L., P. J. Williams, M. J. Lannoo. 2012. Obligate Crayfish Burrow Use and Core Habitat Requirements of Crawfish Frogs. Journal of Wildlife Management.  | Abstract |  Download  |  Publisher Website | 
  • Gerber, B., Arrigo-Nelson, S., Karpanty, S., Kotschwar, M., Wright, P., 2012. Spatial Ecology of the Endangered Milne-Edwards’ Sifaka (Propithecus edwardsi): Do Logging and Season Affect Home Range and Daily Ranging Patterns? International Journal of Primatology 33, 305-321.  | Abstract |  Download  |  Publisher Website | 
  • Fetherman, E. R., D. L. Winkelman, G. J. Schisler, and C. A. Myrick. In press. The effects of Myxobolus cerebralis on the physiological performance of whirling disease resistant and susceptible strains of rainbow trout (Oncorhynchus mykiss). Journal of Aquatic Animal Health.  | Download  | 
  • Winkelman, D.L. 2011. Evaluation of the Flathead Catfish Population and Fishery on Lake Carl Blackwell, OK, with emphasis on the effects of Noodling. Pages 209-218 in P.H. Michaletz and V.H. Travniceck, editors. Conservation, ecology, & management of catfish: the second international symposium. American Fisheries Society, Symposium 77, Bethesda, MD.
  • Farnsworth, M. L., W. L. Kendall, P. F. Doherty, Jr., R. S. Miller, G. C. White, J. D. Nichols, and A. B. Franklin. 2011. Targeted surveillance for highly pathogenic avian influenza in migratory waterfowl and geese across the United States. Pages 143-155 in Pandemic Influenza Viruses: Sceience, Surveillance and Public Health. S. K. Majumdar et al., eds, The Pennsylvania Academy of Science.
  • McGowan, C.P., J.E. Hines, J.D. Nichols, J.E. Lyons, D.R. Smith, K. Kalasz, L.J. Niles, A. Dey, N.A. Clark, P.W. Atkinson, C.D.T. Minton, W. Kendal. 2011. Demographic consequences of migratory stopover: linking red knot survival to horseshoe crab spawning abundance. Ecosphere 2: art 69.
  • Sauer, J. R., M. Otto, W. L. Kendall, and G. S. Zimmerman. 2011. Monitoring bald eagles using lists of nests: a response to Watts and Duerr. Journal of Wildlife Management 75:509-512.
  • Horton, G. E., B. H. Letcher, and W. L. Kendall. 2011. A multi-state capture-recapture modeling strategy to separate true survival from permanent emigration for a passive integrated transponder tagged population of stream fish. Transactions of the American Fisheries Society 140:320-333.
  • Williams, P. J., R. J. Gutierrez, and S. A. Whitmore. 2011. Home range and habitat selection of spotted owls in the central Sierra Nevada. Journal of Wildlife Management 75:333-343.  | Download  |  Publisher Website | 
  • Garlick, M.J., J.A. Powell, M.B. Hooten, and L. McFarlane. (2011). Homogenization of large-scale movement models in ecology. Bulletin of Mathematical Biology, 73: 2088-2108.
  • Haas, S.E., M.B. Hooten, D. Rizzo, and R.K. Meentemeyer. (2011). Forest species diversity reduces disease risk in a generalist plant pathogen invasion. Ecology Letters, 14: 1108-1116.
  • Hanks, E.M., M.B. Hooten, and F.A. Baker. (2011). Reconciling multiple data sources to improve accuracy of large-scale prediction of forest disease incidence. Ecological Applications, 24: 1173-1188.
  • Hanks, E.M., M.B. Hooten, D.S. Johnson, and J. Sterling. (2011). A velocity-based approach for linking animal telemetry data to environmental drivers of movement. PLoS One, 6(8), e22795.
  • Hooten, M.B. (2011). The State of Spatial and Spatio-Temporal Statistical Modeling. In: Predictive Modeling in Landscape Ecology. Drew A., F. Huettman, and Y. Wiersma (eds). In: Predictive Modeling in Landscape Ecology.
  • Hooten, M.B., W.B. Leeds, J. Fiechter, and C.K. Wikle. (2011). Assessing first-order emulator inference for physical parameters in nonlinear mechanistic models. Journal of Agricultural, Biological, and Environmental Statistics, 16: 475-494.
  • Schmelter, M.L., M.B. Hooten, and D.K. Stevens. (2011). Bayesian sediment transport model for uni-size bedload. Water Resources Research, 47: W11514.
  • Xiao X., E.P. White, M.B. Hooten, and S.L. Durham. (2011). On the use of log-transformation vs. nonlinear regression for analyzing biological power-laws. Ecology, 92: 1887-1894.
  • Dalgleish, H.J., D.N. Koons, M.B. Hooten, C.A. Moffet, and P.B. Adler. (2011). The influence of climate on the demography of three dominant sagebrush steppe plants. Ecology, 92: 75-85.
  • W. D. Walter, D.P. Walsh, M.L. Farnsworth, D.L. Winkelman, and M.W. Miller. 2011. Soil clay content underlies prion infection odds. Nature Communications:2:200 doi: 10.1038 / ncomms1203
  • Cohen, J.B., Gerber, B.D., Karpanty, S.M., Fraser, J.D., Truitt, B.R., 2011. Day and Night Foraging of Red Knots (Calidris canutus) during Spring Stopover in Virginia, USA. Waterbirds 34, 352-356.  | Abstract |  Download  |  Publisher Website | 
  • Gerber, B., Karpanty, S., Kelly, M., 2011. Evaluating the potential biases in carnivore capture–recapture studies associated with the use of lure and varying density estimation techniques using photographic-sampling data of the Malagasy civet. Population Ecology, 1-12.  | Abstract |  Download  |  Publisher Website | 
  • Hoffman, A. S., J. L. Heemeyer, P. J. Williams, J. R. Robb, D. R. Karns, V. C. Kinney, N. J. Engbrecht, and M. J. Lannoo. 2010. Strong site fidelity and a variety of imaging techniques reveal around-the-clock and extended activity patterns in crawfish frogs (Lithobates areolatus). BioScience 60:829-834.  | Download  | 
  • Bailey, L. L., S. J. Converse, and W. L. Kendall. 2010. Bias, precision, and parameter redundancy in complex multistate models with unobservable states. Ecology 91:1598-1604
  • McGree, M.M., D.L. Winkelman, N.K. Vieira, and A. Vajda. 2009. Reproductive failure of the red shiner after acute exposure to an exogenous estrogen. Canadian Journal of Fisheries and Aquatic Sciences 67:1730-1743.  | Download  |  Publisher Website | 
  • Martin, J. M., A. F. O’Connell, W. L. Kendall, M. C. Runge, T. R. Simons, A. H. Waldstein, S. A. Schulte, S. J. Converse, G. W. Smith, M. Rikard, and E. F. Zipkin. 2010. Optimal control of native predators. Biological Conservation 143:1751-1758.
  • Sauer, J. R., W. A. Link, W. L. Kendall, D. D. Dolton, and D. K. Niven. 2010. Mourning dove population change in North America, 1966-2007: indexes based on doves seen and heard can tell different stories. Journal of Wildlife Management 74:1059-1069.
  • McClintock, B. T., J. D. Nichols, L. L. Bailey, D. I. MacKenzie, W. L. Kendall, and A. B. Franklin. 2010. Seeking a second opinion: uncertainty in disease ecology. Ecology Letters 13:659-674.
  • Reichert, B. E., J. M. Martin, W. L. Kendall, C. E. Cattau, and W. M. Kitchens. 2010. Interactive effects of senescence and natural disturbance on the annual survival probabilities of snail kites. Oikos 119:972-979.
  • Hooten, M.B. and C.K. Wikle (2010). Statistical Agent-Based Models for Discrete Spatio-Temporal Systems. Journal of the American Statistical Association, 105: 236-248.
  • Hooten, M.B., Anderson, J., and L.A. Waller. (2010). Assessing North American influenza dynamics with a statistical SIRS model. Spatial and Spatio-Temporal Epidemiology, 1: 177-185.
  • Hooten, M.B., Johnson, D.S., Hanks, E.M., and J.H. Lowry. (2010). Agent-based inference for animal movement and selection. Journal of Agricultural, Biological and Environmental Statistics, 15: 523-538.
  • Larsen, R.T., J.A. Bissonette, J.T. Flinders, M.B. Hooten, and T.L. Wilson (2010). Summer spatial patterning of Chukars in relation to free water in Western Utah. Landscape Ecology, 25: 135-145.
  • Nippert, J.B., M.B. Hooten, D.R. Sandquist, and J.K. Ward (2010). A Model for predicting El Nino events using tree-ring cellulose del18O. Journal of Geophysical Research, 115: 1-9.
  • Wikle, C.K. and M.B. Hooten (2010). A general science-based framework for nonlinear spatio-temporal dynamical models. TEST, 19: 417-451.
  • Wilson, R.R., M.B. Hooten, B.N. Strobel, and J.A. Shivik (2010). Accounting for individuals, uncertainty, and multi-scale clustering in core area estimation. Journal of Wildlife Management, 74: 1343-1352.
  • Wilson, R.R., T.L. Blankenship, M.B. Hooten, and J.A. Shivik. (2010). Prey-mediated avoidance of an intraguild predator by its intraguild prey. Oecologia, 164: 921-929.
  • Wilson, T.L., J.B. Odei, M.B. Hooten, and T.C. Edwards (2010). Hierarchical spatial models for predicting pygmy rabbit distribution and relative abundance. Journal of Applied Ecology, 47: 401-409.
  • Gerber, BD, Karpanty, SM, Crawford, C, Kotschwar, M, and Randrianantenaina, J. (2010). An assessment of carnivore relative abundance and density in the eastern rainforests of Madagascar using remotely-triggered
    camera traps. Oryx 44, 219-222.  | Abstract |  Download  |  Publisher Website | 
  • Kendall, W. L., and G. C. White. 2009. A cautionary note on trading spatial for temporal sampling in studies of site occupancy. Journal of Applied Ecology 46:1182-1188.
  • Martin, J., M. C. Runge, J. D. Nichols, B. C. Lubow, and W. L. Kendall. 2009. Establishing decision thresholds for conservation. Ecological Applications 19:1079-1090.
  • Zimmerman, G. S., T. J. Moser, W. L. Kendall, P. F. Doherty, Jr., G. C. White, and D. F. Caswell. 2009. Factors influencing reporting and harvest probabilities in North American Geese. Journal of Wildlife Management 73:710-719.
  • Gibson-Reinemer, D. K., B. M. Johnson, P. J. Martinez, D. L. Winkelman, A. E. Koenig, and J. D. Woodhead. 2009. Elemental signatures in otoliths of hatchery trout: distinctiveness and utility for detecting origins and movement. Canadian Journal of Fisheries and Aquatic Sciences 66:513-524.
  • Converse, S. J., W. L. Kendall, P. F. Doherty, Jr., and P. G. Ryan. 2009. Demography of Marion Island grey-headed albatross: analysis using advances in mark-recapture models. The Auk 126:77-88.
  • Converse, S. J., W. L. Kendall, P. F. Doherty, Jr., M. B. Naughton, and J. E. Hines. 2009. A traditional and less-invasive robust design: choices in optimizing effort allocation for seabird studies. Pages 727-744 in D. L. Thomson, E. G. Cooch, and M. C. Conroy, editors. Modeling demographic processes in marked populations, Springer Science+Business Media, New York, New York, USA.
  • Cangelosi, A.R. and M.B. Hooten (2009). Models for Bounded Systems with Continuous Dynamics. Biometrics, 65: 850-856.
  • Hooten, M.B., C.K. Wikle, L.D. Carlile, R. Warner, and D. Pitts (2009). Hierarchical population models for the red-cockaded woodpecker. Rich, T.D., M. C. Arizmendi, D. Demarest and C. Thompson (eds). Tundra to Tropics: Connecting Birds, Habitats and People. Proceedings of the 4th International Partners in Flight Conference, 13-16 February 2008. McAllen, TX. University of Texas-Pan American Press. Edinburg, TX. pgs. 354-364.
  • Hooten, M.B., C.K. Wikle, S. Sheriff, and J. Rushin (2009). Optimal spatio-temporal hybrid sampling designs for ecological monitoring. Journal of Vegetation Science, 20: 639-649.
  • Hooten, M.B., M.J. Garlick, and J.A. Powell. (2009). Advantageous change of support in inverse implementations of statistical differential equation models. In JSM Proceedings, Section on Bayesian Statistical Science. Alexandria, VA: American Statistical Association. 1847-1857.
  • Odei, J.B., M.B. Hooten, and J. Jin. (2009). Hierarchical spatio-temporal models for intermountain snow water storage. In JSM Proceedings, Section on Statistics and the Environment. Alexandria, VA: American Statistical Association. 870-878.
  • Bailey, L. L., W. L. Kendall, and D. R. Church. 2009. Exploring/extensions of multistate models with multiple unobservable states. Pages 693-709 in D. L. Thomson, E. G. Cooch, and M. C. Conroy, editors. Modeling demographic processes in marked populations, Springer Science+Business Media, New York, New York, USA.
  • Kendall, W. L. 2009 One size does not fit all: adapting mark-recapture and occupancy models for state uncertainty. Pages 765-780 in D. L. Thomson, E. G. Cooch, and M. C. Conroy, editors. Modeling demographic processes in marked populations, Springer Science+Business Media, New York, New York, USA
  • Kendall, W. L., S. A. Converse, P. F. Doherty, Jr., M. Naughton, A. Anders, J. E. Hines and E. Flint. 2009. Design considerations in demographic studies of animal populations: a case of colonial seabirds. Ecological Applications 19:55-68.
  • Zimmerman, G. S., W. L. Kendall, T. J. Moser, G. C. White, and P. F. Doherty, Jr. 2009. Temporal patterns of leg band retention in resident and non-resident North American geese. Journal of Wildlife Management 73:82-88.
  • Lukacs, P. M., K. P. Burnham, B. P. Dreher, K. T. Scribner, S. R. Winterstein. 2009. Extending the robust design for DNA-based capture-recapture date incorporating genotyping error and laboratory date, pp 711-726 in Modeling Demographic Processes in Marked Populations, Environmental and Ecological Statistics 3. Thomson, D. L., E. G. Cooch, and M. J. Conroy (Eds. ). Springer, New York, NY.
  • McClintock, B. T., G. C. White, K. P. Burnham, and M. A. Pryde. 2009. A generalized mixed effects model of abundance for mark-resight data when sampling is without replacement, pp 271-289 in Modeling Demographic Porcesses in Marked Populations, Environmental and Ecological Statistics 3, Thomson, D. L., E. G. Cooch, and M. J. Conroy (Eds. ). Springer, New York, NY.
  • White, G. C., K. P. Burnham, and R. J. Barker. 2009. Evaluation of a Bayesian MCMC random effects inference methodoly for capture-mark-recapture date, pp 1119-1127 in Modeling Demographic Processes in Marked Populations, Environmental and Ecological Statistics 3. Thomson, D. L., E. G. Cooch, and M. J. Conroy (Eds. ). Springer, New York, NY.
  • Lyons, J. E., M. C. Runge, H. P. Laskowski, and W. L. Kendall. 2008. Monitoring in the context of structured decision making and adaptive management. Journal of Wildlife Management 72:1683-1692.
  • Schook, D. M., M. D. Collins, W. E. Jensen, P. J. Williams, N. E. Bader, and T. H. Parker. 2008. Geographic patterns of song similarity in the dickcissel (Spiza Americana). Auk 125:953-964.  | Download  | 
  • Schaffler, J. J., and D. L. Winkelman. 2008. Temporal and spatial variability in trace element signatures of juvenile striped bass from two spawning locations in Lake Texoma, Oklahoma-Texas. Transactions of the American Fisheries Society 137:818-829.
  • Mazerolle, M. J., L. L. Bailey, W. L. Kendall, J. A. Royle, S. J. Converse, and J. D. Nichols. 2007. Making great leaps forward in herpetology: accounting for detectability in field studies. Journal of Herpetology 41:672-689.
  • Sauer, J. R., W. A. Link, W. L. Kendall, J. R. Kelley, Jr., and D. K. Niven. 2008. A hierarchical model for estimating change in American woodcock populations. Journal of Wildlife Management 72:204-214.
  • Hooten, M.B, R.R. Wilson, and J.A. Shivik (2008). Hard core or soft core: On the characterization of animal space use. 2008 Proceedings of the American Statistical Association [CD-ROM], Alexandria, VA: American Statistical Association: pp. 1301-1308.
  • Hooten, M.B. and C.K. Wikle (2008). A Hierarchical Bayesian non-linear spatio-temporal model for the spread of invasive species with application to the Eurasian Collared-Dove. Environmental and Ecological Statistics, 15(1): 59-70.
  • Mock, K.E., C.A. Rowe, M.B. Hooten, J. DeWoody, and V.D. Hipkins (2008). Clonal dynamics in western North American aspen (Populus tremuloides). Molecular Ecology, 17: 4827-4844.
  • Farnsworth, M. L., J. A. Hoeting, N. T. Hobbs, M. M. Conner, K. P. Burnham, L. L. Wolfe, E. S. Williams, D. M. Theobold, and M. W. Miller. 2007. The role of geographic information systems in wildlife landscape epidemiology: models of chronic wasting disease in Colorado mule deer. Veterinaria Italiana 43:581-593.
  • Church, D. R., L. L. Bailey, H. M. Wilbur, W. L. Kendall, and J. E. Hines. 2007. Iteroparity in the variable environment of the salamander Ambystoma tigrinum. Ecology 88:891-903.
  • Veran, S., O. Gimenez, E. Flint, W. L. Kendall, P. F. Doherty, and J-D. Lebreton. 2007. The impact of longline fishery impact on adult survival of black-footed albatrosses (Phoebastria nigripes). Journal of Applied Ecology 44:942-952.
  • Lukacs, P. M., L. S. Eggert, K. P. Burnham. 2007. Estimating population size from dung-based DNA capture-recapture data. Wildlife Biology in Practice 3:83-92. A web publication http://www. socpvs. org/journals/index. php/wbp
  • Mazerolle, M. J., L. L. Bailey, W. L. Kendall, J. A. Royle, S. J. Converse, and J. D. Nichols. 2007. Making great leaps forward in herpetology: accounting for detectability in field studies. Journal of Herpetology 41:672-689.
  • Lukacs, P. M., W. L. Thompson, W. L. Kendall, W. R. Gould, P. F. Doherty, Jr., K. P. Burnham, and D. R. Anderson. 2007. Concerns regarding a call for pluralism. Journal of Applied Ecology 44:456-460.
  • Conner, M. M, M. W. Miller, M. R. Ebinger, K. P. Burnham. 2007. A spatial, meta-BACI approach for evaluating effects of chronic wasting disease in free-ranging mule deel. Ecological Applications 17:140-153
  • Lukacs, P. M., W. L. Thompson, W. L. Kendall, W. R. Gould, P. F. Doherty, K. P. Burnham, D. R. Anderson. 2007. Concerns regarding a call for pluralism. Journal of Applied Ecology 44:456-460
  • Arab, A., M.B. Hooten, and C.K. Wikle (2007). Hierarchical Spatial Models. In: Encyclopedia of Geographical Information Science. Springer.
  • Cangelosi, A.R. and M.B. Hooten (2007). Approximations to Continuous Dynamical Processes in Hierarchical Models. 2007 Proceedings of the American Statistical Association [CD-ROM], Alexandria, VA: American Statistical Association: pp. 1281-1287.
  • He, H.S., D.C. Dey, X. Fan, M.B. Hooten, J.M. Kabrick, C.K. Wikle, and Z. Fan (2007). Mapping pre-European settlement vegetation using a hierarchical Bayesian model and GIS. Plant Ecology, 191: 85-94.
  • Hooten, M.B. (2007). Journal of the American Statistical Association. Book Review: Le, N.D. and J.V. Zidek. (2006) Statistical Analysis of Environmental Space-Time Processes. Springer-Verlag.
  • Hooten, M.B. and C.K. Wikle (2007). Invasions, Epidemics, and Binary Data in a Cellular World. 2007 Proceedings of the American Statistical Association [CD-ROM], Alexandria, VA: American Statistical Association: pp. 3999-4010.
  • Hooten, M.B. and C.K. Wikle (2007). Shifts in the spatio-temporal growth dynamics of shortleaf pine. Environmental and Ecological Statistics, 14(3): 207-227.
  • Hooten, M.B., C.K. Wikle, R.M. Dorazio, and J.A. Royle (2007). Hierarchical spatio-temporal matrix models for characterizing invasions. Biometrics, 63: 558-567.
  • White, G. C., W. L. Kendall, and R. J. Barker. 2006. Multistate models and their extensions in program MARK. Journal of Wildlife Management 70:1521-1529.
  • Tatarenkov, A., F. Barreto, D. L. Winkelman, and J. C. Avise. 2006. Genetic monogamy in the channel catfish, Ictalurus punctatus, a species with uniparental nest guarding. Copeia 2006:735-741.
  • Sagar, C. R., and D. L. Winkelman. 2006. Effects of increased feeding frequency on growth of hybrid bluegill in ponds. North American Journal of Aquaculture 68:313-316.
  • Anthony, R. G., E. D. Forsman, A. B. Franklin, D. R. Anderson, K. P. Burnham, G. C. White, C. J. Schwarz, J. D. Nichols, J. E. Hines, G. S. Olson, S. H. Ackers, S. L. Andrews, B. L. Biswell, P. C. Carlson, L. V. Diller, K. M. Dugger, K. E. Fehring, T. L. Fleming, R. P. Gerhardt, S. A. Gremel, R. J. Gutierrez, P. J. Happe, D. R. Herter, J. M. Higley, R. B. Horn, L. L. Irwin, P. J. Loschl, J. A. Reid, S. G. Sovern. 2006. Status and trends in demography of northern spotted owls, 1985-2003. Wildlife Monographs 163:1-47.
  • McClintock, B. T., G. C. White, K. P. Burnham. 2006. A robust design mark-resight abundance estimator allowing heterogeneity in resighting probabilities. Journal of Agricultural, Biological and Environmntal Statistics. 11:231-248.
  • Kendall, W. L. and E. G. Cooch. 2006. The “Robust Design”. Pages 16-1 to 16-33 in E. G. Cooch and G. C. White (eds), Program MARK: a gentle introduction, 5th edition. http://www.phidot.org/software/mark/docs/book/.
  • Doherty, P. F., Jr., W. L. Kendall, S. Sillett, M. Gustafson, B. Flint, M. Naughton, C. S. Robbins, and P. Pyle. 2006. Development of a banding database for North Pacific albatross Implications for future data collection. Pages 173-179 in I. G. Macintyre, editor. Atoll Research Bulletin No. 543. 579 pp.
  • Hooten, M.B. and C.K. Wikle (2006). Spatio-temporal processes in ecology: A gentle introduction. Journal of Biogeography 33, 1150-1152. Book Review: Reiners, W.A. and K.L. Driese. (2004) Transport processes in nature: propagation of ecological influences through environmental space. Cambridge University Press.
  • Wikle, C.K. and M.B. Hooten (2006). Hierarchical Bayesian Spatio-Temporal Models for Population Spread. Clark, J.S. and A. Gelfand (eds). In: Applications of Computational Statistics in the Environmental Sciences: Hierarchical Bayes and MCMC Methods. Oxford University Press.
  • Francis, C. M., Bart, J., E. H. Dunn, K. P. Burnham, and C. J. Ralph. 2005. Enhancing the value of the breeding bird survey: Reply to Sauer et. al. 2005. Journal of Wildlife Management 69:1327-1332
  • Borchers, D. L., Burnham, K. P. 2004. General formulation for distance sampling, pp 6-30 (Chapter 2) in Advanced Distance Sampling (Buckland et al. editors), Oxford University Press, Oxford, UK.
  • Buckland, S. T., Anderson, D. R., Burnham, K. P. Laake, J. L. Borches, D. L., Thomas, L. J. (Editors). 2004. Advanced Distance Sampling - Estimating Abundance of Biological Populations. Oxford University Press, Oxford, UK.
  • Sheaffer, S. E., W. L. Kendall, and E. F. Bowers. 2005. Impact of special early harvest seasons on subarctic-nesting and temperate-nesting Canada Geese. Journal of Wildlife Management 69:1494-1507.
  • White, G. C., W. M. Block, J. P. Ward, Jr., J. L. Ganey, A. B. Franklin, S. L. Spangle, R. J. Vahle, S. E. Rinkevich, W. H. Moir, F. P. Howe, and J. L. Dick, Jr. 1999. Science Versus Political Reality in Delisting Criteria for a Threatened Species: The Mexican Spotted Owl Experience. Transactions of the North American Wildlife and Natural Resources Conference 64:292-306.
  • Farnsworth, M. L., Wolfe, L. L., Hobbs, N. T., Burnham, K. P., and Miller, M. W. (2004). Communication: Human land use influences chronic wasting disease prevalence in mule deer. Ecological Applications 14.
  • Lukacs, P. M., and K. P. Burnham. 2005. Review of capture-recapture methods applicable to noninvasive genetic sampling. Molecular Ecology 14:3909-3919
  • Lancia, R. A., W. L. Kendall, J. D. Nichols, and K. H. Pollock. 2005. Estimating the number of animals in wildlife populations. Pages 106-153 in C. Braun, ed., Research and Management Techniques for Wildlife and Habitats, The Wildlife Society, Bethesda, Maryland.
  • Burnham, K. P., and D. R. Anderson. 2004. Multimodel inference: understanding AIC and BIC in model selection. Sociological Methods and Research 33:261-305.
  • Lukacs, P. M., D. R. Anderson, K. P. Burnham. 2005. Evaluation of trapping-web designs. Wildlife Research 32:103-110.
  • Thomas, L., Burnham, K. P. Buckland, S. T. 2004. Temporal inferences from distance sampling surveys, pp 71-107 (Chapter 5) in Advanced Distance Sampling (Buckland et al. editors), Oxford University Press, Oxford, UK.
  • Bart, J., Burham, K. P., Dunn, E. H., Francis, C., Ralph, C. J. 2004. Goals and strategies for estimating trends in landbird abundance. Journal of Wildlife Management 68: 611-623.
  • Farnsworth, M. L., L. L. Wolfe, N. T. Hobbs, K. P. Burnham, E. S. Williams, D. M. Theobald, M. M. Conner, and M. W. Miller. 2005. Human land use influences chronic wasting disease prevalence in mule deer. Ecological Applications 15:119-126.
  • Burnham, K. P., Buckland, S. T., Laake, J. L., Borchers, D. L., Barques, T. A. 2004. Further topics pp 307-392 (Chapter 11) in Advance Distance Sampling (Buckland et al., editors) Oxford University Press, UK
  • Lukacs, P. M., and K. P. Burnham, 2005. Estimating population size from DNA-based closed capture-recapture data incorporating genotyping error. Journal of Wildlife Management 69:396-403.
  • Nichols, J. D., W. L. Kendall, J. E. Hines, and J. A. Spendelow. 2004. Estimation of sex-specific survival from capture-recapture data when sex is not always known. Ecology 85:3192-3201.
  • Burnham, K. P. 2004. Foreword (invited), in the book, "Sampling Rare or Elusive Species: Concepts, Designs and Techniques for Estimating Population Parameters. Thompson, W. L. (Editor). Island Press, Washington, D. C.
  • Bailey, L. L., W. L. Kendall, D. R. Church, and H. M. Wilbur. 2004. Estimating survival and breeding probabilities for pond-breeding amphibians using a modified robust design. Ecology 85:2456-2466.
  • Kendall, W. L. 2004. Coping with unobservable and mis-classified states in capture-recapture studies. Animal Biodiversity and Conservation 27:97-107.
  • Lukacs, P. M., Dreitz, V. J., Knopf, F. L., Burnham, K. P., 2004. Estimating survival probabilities of unmarked dependent young when detection is imperfect. The Condor 106:926-931.
  • Conn, P. B., and W. L. Kendall. 2004. Evaluating mallard adaptive management models with time series. Journal of Wildlife Management 68(4):1065-1082.
  • Walsh, M. G., and D. L. Winkelman. 2004. Fish assemblage structure in an Oklahoma Ozark stream before and after rainbow trout introduction. Pages 413-426 in M. J. Nickum, P. M. Mazik, J. G. Nickum, and D. D. MacKinlay, editors. Propagated fish in resource management. American Fisheries Society, Symposium 44, American Fisheries Society, Bethesda, Maryland.
  • Barker, R. J., Burnham, K. P., White, G. C. 2004. Encounter history modeling of joint mark-recapture, tag-resighting and tag-recovery data under temporary migration. Statistica Sinica 14:1037-1055.
  • Kendall, W. L., J. R. Sauer, J. D. Nichols, R. Pradel, and J. E. Hines. 2004. On the use of capture recapture models in mist net studies. Pages 173-181 in C. J. Ralph and E. H. Dunn, eds. Monitoring Bird Populations with Mist Nets, Studies in Avian Biology No. 29.
  • Moore, C. T., and W. L. Kendall. 2004. Costs of detection bias in index-based population monitoring. Animal Biodiversity and Conservation 27(1):287-296.  | Abstract |  Download  |  Publisher Website | 
  • Ganey, J. L., G. C. White, D. C. Bowden, and A. B. Franklin. 2004. Evaluating methods for monitoring populations of Mexican spotted owls: a case study. Pages 337-385 In: W. L. Thompson, editor. sampling rare or elusive species: concepts, designs and techniques for estimating population parameters. Island Press, Washington, D. C.
  • Lukacs, P., A. B. Franklin, and D. R. Anderson. 2004. Passive approaches to detection in distance sampling. Pages 260-280 In: S. T. Buckland, D. R. Anderson, K. P. Burnham, J. L Laake, D. L. Borchers and L. Thomas, editors. Advanced distance sampling. Oxford University Press, Oxford, Great Britain.
  • Conn, P. B., W. L. Kendall, and M. D. Samuels. 2004. A general model for the analysis of mark-resight, mark-recapture, and band recovery data under tag loss. Biometrics 60:900-909.
  • Kendall, W. L. and J. D. Nichols. 2004. Modern statistical methods for the study of dispersal and movement of marked birds. Condor 106:720-731
  • D. B. Fenner, D. L. Winkelman and M. G. Walsh. 2004. Diet overlap of introduced rainbow trout and three native fishes in an Ozark stream. Pages 475-482 in M. J. Nickum, P. M. Mazik, J. G. Nickum and D. D. MacKinlay, editors. Propagated fish in resource management. American Fisheries Society Symposia 44, American Fisheries Society, Bethesda, Maryland.
  • Winkelman, D. L., and C. Sager. Managing Hybrid Bluegill Fisheries: estimating and predicting the effects of young anglers. Pages 207-214 in M. J. Nickum, P. M. Mazik, J. G. Nickum and D. D. MacKinlay, editors. Propagated fish in resource management. American Fisheries Society Symposia 44, American Fisheries Society, Bethesda, Maryland.
  • Runge, M. C., W. L. Kendall, and J. D. Nichols. 2004. Assessing the Effects of
    Exploitation on Animal Populations. Pages 303-328 in W. J. Sutherland, I. Newton, and R. Green (ed.), Bird Ecology and Conservation: a Handbook of Techniques, Oxford University Press, Oxford, UK.
  • Walsh, M. G., and D. L. Winkelman. 2004. Short-term retention of floy anchor tags by stream-dwelling smallmouth bass. Proceedings of the Annual Conference of the Southeastern Association of Fish and Wildlife Agencies 58:38-43.
  • Franklin, A. B., R. J. Guti�rrez, J. D. Nichols, M. E. Seamans, G. C. White, G. S. Zimmerman, J. E. Hines, T. E. Munton, W. S. LaHaye, J. A. Blakesley, G. N. Steger, B. R. Noon, D. W. H. Shaw, J. J. Keane, T. L. McDonald, and S. Britting. 2004. Population dynamics of the California spotted owl; a metaanalysis. Ornithological Monographs No. 54.
  • Kendall, W. L., C. A. Langtimm, C. A. Beck, and M. C. Runge. 2004. Mark-recapture analysis for estimating manatee reproductive rates. Marine Mammal Science 20:424-437.
  • Nichols, J. D., W. L. Kendall, and M. C. Runge. 2004. Estimation of Survival and Movement in Animal Populations. Pages 119-137 in W. J. Sutherland, I. Newton, and R. Green (ed.), Bird Ecology and Conservation: a Handbook of Techniques, Oxford University Press, Oxford, UK.
  • Runge, M. C., C. A. Langtimm, and W. L. Kendall. 2004. A stage-based model of manatee population dynamics. Marine Mammal Science 20:361-385.
  • Walsh, M. G., and D. L. Winkelman. 2004. Anchor and Visible Implant Elastomer Tag Retention by Hatchery Rainbow Trout Stocked into an Ozark Stream. North American Journal of Fisheries Management 24:1425-1429.
  • Kasparian, M. A., E. C. Helgren, S. M. Ginger, L. P. Levesque, J. E. Clark, D. L. Winkelman, and D. M. Engle 2004. Population characteristics of Virginia opossum in the cross timbers during raccoon reduction. American Midland Naturalist 151:154-163.
  • Walsh, M. G., D. L. Winkelman, and R. J. Bahr. 2004. Short-term mortality and electrofishing injury in hatchery-reared rainbow trout stocked into an Ozark stream. North American Journal of Fisheries Management 24:316-321.
  • Franklin, A. B., P. K. Lukacs, and D. R. Anderson. 2003. A new design to estimate density of trappable organisms: the trapping line transect. Third International Wildlife Management Congress, Christchurch, New Zealand.
  • Miller, M. W., W. L. Kendall, and J. B. Hestbeck. 2003. Modeling survival and movement of resident Giant Canada Geese populations in the Atlantic Flyway. Page 200 in Proceedings of the International Canada Goose Symposium. Wetlands International.
  • Franklin, A. B., R. J. Guti�rrez, P. C. Carlson, and D. Pavlacky. 2003. Population ecology of the northern spotted owl (Strix occidentalis caurina) in northwestern California: annual results, 2002. U. S. Forest Service, Region 5, San Francisco, California. 15pp.
  • Bergstedt, R. A., McDonald, R. B., Mullett, K. M., Wright, G. M., Swink, W. D., Burnham, K. P. 2003. Mark-recapture population estimates of parasitic sea lampreys (Petromyzon marinus) in Lake Huron. Journal of Great Lakes Research 29 (sup1):226-239.
  • Hines, J. E., W. L. Kendall, and J. D. Nichols. 2003. On the use of the robust design with transient capture-recapture models. Auk 120(4):1151-1158.
  • Kendall, W. L., J. E. Hines, and J. D. Nichols. 2003. Adjusting multi-state
    capture-recapture models for mis-classification bias: manatee breeding proportions. Ecology 84:1058-1066.
  • Mackenzie, D. I, J. D. Nichols, J. E. Hines, M. G. Knutson, and A. B. Franklin. 2003. Estimating site occupancy, colonization, and local extinction when a species is detected imperfectly. Ecology 84:2200-2207.
  • Bergersen, E. P., and P. J. Martinez. 2003. The use of a pattern recognition model to assess fish habitat in two Colorado reservoirs. Lake and Reservoir Management 19(1):55-63.
  • Hooten, M.B., Larsen, D.R., and C.K. Wikle, (2003). Predicting the spatial distribution of ground flora on large domains using a hierarchical Bayesian model. Landscape Ecology , 18, 487-502.
  • Bowden, D. C., G. C. White, A. B. Franklin, and J. L. Ganey. 2002. Estimating population size with correlated sampling unit estimates. Journal of Wildlife Management. 67:1-10
  • Oyler-McCance, S. J., K. P. Burnham, and C. E. Braun. 2000. Modeling management and conservation strategies for Gunnison sage grouse in Colorado. Pp. 305-307 in Wildlife, Land, and People: Priorities for the 21st Century, R. Fields, R. Warren, H. Okarma, and P. Sievert (Editors). Proceedings of the Second International Wildlife Management Congress. The Wildlife Society, Bethesda, Maryland.
  • Bond, M. L., R. J. Gutierrez, A. B. Franklin, W. S. LaHaye, C. A. May, and M. E. Seamans. 2002. Survival and movements of spotted owls immediately after wildfire. Wildlife Society Bulletin 30:1022-1028
  • Franklin, A. B., and R. J. Gutierrez. 2002. Spotted owls, forest fragmentation, and forest heterogeneity. Studies in Avian Biology 25:204-221.
  • Franklin, A. B., B. R. Noon, and T. L. George. 2002. What is habitat fragmentation? Studies in Avian Biology 25:20-29.
  • Thomas, L., Laake, J. L., Strindberg, S., Marques, F. F. C., Buckland, S. T., Borchers, D. L., Anderson, D. R., Burnham, K. P., Hedley, S. L., and Pollard, J. H. 2002. Distance 5. 0. Release 2. Research Unit for Wildlife Population Assessment, University of St. Andrews, UK. http://www. ruwpa. st-and. ac. uk/distance/
  • Burnham, K. P. 2002. Invited discussion comments on the paper "Bayesian measures of model complexity and fit, " Spiegelhalter et al. Journal of the Royal Statistical Society, Series B 64:1-629.
  • Kendall, W. L., and J. D. Nichols. 2002. Estimating state-transition probabilities for unobservable states using capture-recapture/resighting data. Ecology 83:3276-3284.
  • Anderson, D. R., and K. P. Burnham. 2002. Avoiding pitfalls when using information-theoretic methods. Journal of Wildlife Management 66:912-918.
  • Burnham, K. P., and D. R. Anderson. 2002. Model selection and multimodel inference: A practical information-theoretical approach (2nd Edition). Springer-Verlag, New York, NY. 488pp.
  • Thomas, L, Buckland, S. T., Burnham, K. P., Anderson, D. R., Laake, J. L., Borchers, D. L., Strindberg, S. 2002. Distance sampling. Pp 544-552. Volume 1, in Encyclopedia of Environmetrics, El-Shaarawi, A. H., Piegorsh, W. W., Wiley, John and Sons Ltd. Chichester.
  • MacKenzie, D. I., and W. L. Kendall. 2002. How should detection probability be
    incorporated into estimates of relative abundance? Ecology 83:2387-2393.
  • Kowalski, D. A., and E. P. Bergersen. 2002. The toxicity of Bayluscide and TFM to Tubifex tubifex: implications for chemical control of the oligochaete host of whirling disease. North American Journal of Fisheries Management 65(3):171-178.
  • Wolfe, L. L., Conner, M. M., Baker, T. H., Dreitz, V. J., Burnham, K. P., Williams, E. S., Hobbs, N. T., and Miller, M. W. 2002. Evaluation of antermortem sampling to estimate chronic wasting disease prevalence in free-ranging mule deer. Journal of Wildlife Management 66:564-573.
  • Schisler, G. J., and E. P. Bergersen. 2002. Evaluation of risk of high elevation Colorado waters to the establishment of M. cerebralis. Pages 33-42 in Whirling Disease: reviews and current topics, J. L. Bartholomew and J. C. Wilson (Eds. ). American Fisheries Society Symposium 29, Bethesda, Maryland.
  • White, G. C., A. B. Franklin, and T. M. Shenk. 2002. Estimating parameters of PVA models from data on marked animals. Pages 169-190 in Population viability analysis, S. R. Beissinger and D. R. McCullough, editors. University of Chicago Press, Chicago, Illinois.
  • Winkelman, D. L., and M. J. Van Den Avyle. 2002. A comparison of diets of blueback herring (Alosa aestivalis) and threadfin shad (Dorosoma petenense) in a large southeastern U. S. reservoir. Journal of Freshwater Ecology 17(2):209-221.
  • Kendall, W. L., and W. R. Gould. 2002. An appeal to undergraduate wildlife programs: send scientists to learn statistics. Wildlife Society Bulletin 30:623-627.
  • Franklin, A. B., 2002. Exploring ecological relationships in survival and estimating rates of population changes using program MARK. Pages 290-296 In R. Field, R. J. Warren, H. Okarma, and P. R. Sievert, editors. Wildlife, land, and people: priorities for the 21st century. Proceedings of the second International Wildlife Management Congress. The Wildlife Society, Bethesda, Maryland.
  • Allen, M. B. and E. P. Bergersen. 2002. Factors influencing the distribution of Myxobolus cerebralis, the causative agent of whirling disease, in the Cache la Poudre River, Colorado. Diseases of Aquatic Organisms 49:51–60.
  • Burnham, K. P., and G. C. White. 2002. Evaluation of some random effects methodology applicable to bird ringing data. Pp. 245-264 in Statistical Analysis of Data from Marked Bird Populations, Morgan, B. J. T., Thomson, D. L. (Eds). Journal of Applied Statistics 29, numbers 1-4.
  • Noon, B. R., and A. B. Franklin. 2002. Scientific research and the spotted owl: opportunities for major contributions to avian population ecology. Auk 119:311-320.
  • Parmenter, R. R., T. L. Yates, D. R. Anderson, K. P. Burnham, J. L. Dunnum, A. L. Franklin, M. T. Friggens, B. C. Lubow, M. Miller, G. S. Olson, C. A. Parmenter, J. Pollard, E. A. Rexstad, T. M. Shenk, T. R. Stanley, and G. C. White. 2002. Small mammal density estimation: a field comparison of grid-based versus web-based density estimators. Ecological Monographs 73:1-26.
  • Harris, R. B., and K. P. Burnham. 2002. On estimating wildlife densities from line transect data. Acta Zoologica Sinica [Dongwu Xuebao] 48:812-818 (in Chinese. ) (This journal is sometimes referred to as The Chinese Journal of Zoology. )
  • Burnham, K. P., and G. C. White. 2002. Evaluation of some random effects methodology applicable to bird ringing data. Journal of Applied Statistics 29(1-4):245-264.
  • Franklin, A. B., D. R. Anderson, and K. P. Burnham. 2002. Estimation of long-term trends and variation in avian survival probabilities using random effects models. Pp. 267-287 in Statistical Analysis of Data from Marked Bird Populations, Morgan, B. J. T., and Thomson, D. L. (Eds). Journal of Applied Statistics 29, numbers 1-4.
  • Johnson, F. A., W. L. Kendall, and J. A. Dubovsky. 2002. Conditions and limitations on learning in the adaptive harvest management of midcontinent mallards. Wildlife Society Bulletin 30:176-185.
  • Walsh, M. G., D. B. Fenner, D. L. Winkelman. 2002 Comparison of an electric seine and prepositioned area electrofishers for sampling stream fish communities. North American Journal of Fisheries Management. 22:77-85.
  • Rosenstock, S. S., D. R. Anderson, K. G. Kiesen, T. Leukering, and M. F. Carter. 2002. Landbird counting techniques: current practices and an alternative. The Auk 119:46-53.
  • Anderson, D. R. 2001. The need to get the basics right in wildlife field studies. Wildlife Society Bulletin 29:1294-1297.
  • Anderson, D. R., and K. P. Burnham. 2001. Commentary on models in ecology. Bulletin of the Ecological Society of America 82:160-161.
  • Oyler-McCance, S. J., K. P. Burnham and C. E. Braun. 2001. Influence of changes in sagebrush on Gunnison sage grouse in southwestern Colorado. The Southwestern Naturalist 46:323-331.
  • Bergersen, E. P. 2001. Colorado's experience with Northern Pike. Lake Line 21(3):33-36.
  • Kendall, W. L. and R. Bjorkland. 2001. Using open robust design models to estimate temporary emigration from capture-recapture data. Biometrics 57:1113-1122.
  • Block, W. M., A. B. Franklin, J. P. Ward, Jr., J. L. Ganey and G. C. White. 2001. Design and implementation of monitoring studies to evaluate the success of ecological restoration on wildlife. Restoration Ecology 9:293-303.
  • Shenk, T. M., and A. B. Franklin, editors. 2001. Modeling in natural resource management: development, interpretation, and application. Island Press, Washington, D. C.
  • Anderson, D. R., K. P. Burnham, B. C. Lubow, L. Thomas, P. S. Corn, P. A. Medica, and R. W. Marlow. 2001. Field trials of line transect methods applied to estimation of desert tortoise abundance. Journal of Wildlife Management 65:583-597.
  • Anderson, D. R., W. A. Link, D. H. Johnson, and K. P. Burnham. 2001. Suggestions for presenting the results of data analyses. Journal of Wildlife Management 65:373-378.
  • Buckland, S. T., D. R. Anderson, K. P. Burnham, J. L. Laake, D. L. Borchers, and L. J. Thomas. 2001. An introduction to distance sampling: estimation abundance of biological populations. Oxford University Press, Oxford, UK. 448pp.
  • Anderson, D. R., Burnham, K. P., Lubow, B. C., Thomas, L., Corn, P. S., Medica, P. A., Marlow, R. W. 2001. Field trials of line transect methods applied to estimation of desert tortoise abundance. Journal or Wildlife Management 65:583-597.
  • Sager, C. R., D. L. Winkelman. 2001. Comparison of feeding regime and diet on growth of hybrid bluegill. Proceedings of the Annual Conference of Southeastern Association of Fish and Wildlife Agencies 55:346-352.
  • Schisler, G. J., E. P. Bergersen, P. G. Walker, J. Wood and J. K. Epp. 2001. Comparison of single-round polymerase chain reaction (PCR) and pepsin-trypsin digest (PTD) methods for detection of Myxobolus cerebralis. Diseases of Aquatic Organisms 45:109-114.
  • Kendall, W. L. 2001. The Robust Design for capture recapture studies: analysis using program MARK. Pages 279-282 in Proceedings of the 2nd International Wildlife Management Congress. The Wildlife Society, Bethesda, Maryland, USA.
  • Morrison, M., W. Block, D. Strickland, and W. L. Kendall. 2001. Wildlife Study Design. Springer-Verlag, New York, USA, 210pp.
  • Sauer, J. R., J. D. Nichols, J. E. Hines, T. Boulinier, C. H. Flather, and W. L. Kendall. 2001. Regional variation in detection probabilities of species counts from the North American Breeding Bird Survey. Pages 206-209 in Proceedings of the 2nd International Wildlife Management Congress. The Wildlife Society, Bethesda, Maryland, USA.
  • Burnham, K. P., and D. R. Anderson. 2001. Kullback-Leibler information as a basis for strong inference in ecological studies. Wildlife Research 28:111-119.
  • Franklin, A. B., T. M. Shenk, D. R. Anderson, and K. P. Burnham. 2001. Statistical model selection: the alternative to null hypothesis testing. Pp. 75-90 in T. M. Shenk and A. B. Franklin, editors. Modeling in Natural Resource Management: Development, Interpretation, and Application. Island Press, Washington, D. C.
  • Shenk, T. M., and A. B. Franklin. 2001. Models in natural resource management: an introduction. Pages 1-8 in T. M. Thenk and A. B. Franklin, editors. Modeling in natural resource management: development, interpretation, and application. Island Press, Washington, D. C.
  • Anderson, D. R., K. P. Burnham, G. W. Gould, and S. Cherry. 2001. Concerns about finding effects that are actually spurious. Wildlife Society Bulletin 29:311-316.
  • Kendall, W. L. 2001. Using models to facilitate complex decisions. Pages 147-170 in T. Schenk and A. Franklin (eds.), Modeling in Natural Resource Management: Valid Development, Interpretation, and Application, Island Press, Inc, Washington, DC, USA.
  • Kendall, W. L. and R. C. Drewien. 2001. Models for the adaptive harvest management of Rocky Mountain sandhill cranes: problems and potential. Page 217 in Proceedings of the Eighth North American Crane Workshop.
  • Lindberg, M. S., W. L. Kendall, J. E. Hines, and M. G. Anderson. 2001. Combining band recovery data and Pollock’s Robust Design to model temporary and permanent emigration. Biometrics 57:273-281
  • Franklin, A. B., D. R. Anderson, R. J. Gutierrez, and K. P. Burnham. 2000. Climate, habitat quality, and fitness in Northern Spotted Owl populations in northwest California. Ecological Monographs 70:539-590.
  • Anderson, D. R., K. P. Burnham, and W. L. Thompson. 2000. Null hypothesis testing: problems, prevalence, and an alternative. Journal of Wildlife Management 64:912-923.
  • Freilich, J., K. P. Burnham, C. M. Collins, and C. A. Garry. 2000. Factors affecting population assessments of desert tortoises. Conservation Biology 14:1479-1489.
  • Schisler, G. J., E. P. Bergersen and P. G. Walker. 2000. Effects of multiple stressors on morbidity and mortality of fingerling rainbow trout infected with Myxobolus cerebralis. Transactions of the American Fisheries Society 129:859-865.
  • Zendt, J. S., and E. P. Bergersen. 2000. Distribution and abundance of the aquatic oligochaete host Tubifex tubifex for the salmonid whirling disease parasite Myxobolus cerebralis in the Upper Colorado River Basin. North American Journal of Fisheries Management 20:502-512.
  • Smith, D. R., K. P. Burnham, D. M. Kahn, X. He, C. J. Goshorn, K. A. Hattala, and A. Kahnle. 2000. Bias in survival estimates from tag-recovery models where catch-and-release is common, with an example from Atlantic striped bass (Morone Saxatilis). Canadian Journal of Fisheries and Aquatic Science 57:886-897.
  • Anderson, D. R., and K. P. Burnham. 1999. General strategies for the analysis of ringing data. Bird Study 46 (Supplement): S261-270.
  • Anderson, D. R., and K. P. Burnham. 1999. Understanding information criteria for selection among capture-recapture or ring recovery models. Bird Study 46 (Supplement):S14-21.
  • Hubert, W. A., and E. P. Bergersen. 1999. Approaches to habitat analysis. Chapter 2, Pages 7-10 in Aquatic habitat assessment: common methods. M. B. Bain and N. J. Stevenson, editors. American Fisheries Society, Bethesda, MD.
  • Rogers, K. B., and E. P. Bergersen. 1999. Utility of synthetic structures for concentrating adult northern pike and largemouth bass. North American Journal of Fisheries Management 19:1054-1065.
  • Baker, D., W. F. Andelt, K. P. Burnham and W. D. Shepperd. 1999. Effectiveness of hot sauce and deer away repellents for deterring elk browsing of aspen sprouts. Journal of Wildlife Management 63:1327-1336.
  • Anderson, R., M. Morrison, K. Sinclair, D. Strickland, H. Davis, and W. Kendall. 1999. Studying wind energy/bird interactions: a guidance document. National Wind Coordinating Committee.
  • Kendall, W. L. 1999. Robustness of closed capture-recapture methods to violations of the closure assumption. Ecology 80:2517 2525.
  • Anderson, D. R., K. P. Burnham, A. B. Franklin, R. J. Guti�rrez, E. D. Forsman, R. J. Anthony, G. C. White, and T. M. Shenk. 1999. A protocol for conflict resolution in analyzing empirical data related to natural resource controversies. Wildlife Society Bulletin 27:1050-1058.
  • Stanley, T. R., and Burnham, K. P. 1999. A closure test for time-specific closed-population capture-recapture data. Environmental and Ecological Statistics 6:197-209.
  • Freilich, J., Burnham, K. P., Collins, C. M., and Garry, C. A. 2000. Factors affecting population assessments of desert tortoises. Conservation Biology 14:1479-1489.
  • Stanley, T. R., and Burnham, K. P. 1999. A goodness-of-fit test for capture-recapture model Mt under closure. Biometrics 55:366-375.
  • Oyler-McCance, S. J., Kahn, N. W., Burnham, K. P., Braun, C. E., Quinn, T. W. 1999. A population genetic comparison of large and small-bodied sage grouse in Colorado using microsatellite and mitochondrial DNA markers. Molecular Ecology 8:1457-1466.
  • Kendall, W. L. 1999. Adaptive harvest management of waterfowl: implementation and evolution. Pages 14-15 in Adaptive Management Forum: Linking Management and Science to Achieve Ecological Sustainability, Proceedings of the 1998 Provincial Science Forum, G. B. MacDonald, J. Fraser, and P. Gray (eds), Ontario Ministry of Natural Resources, Peterborough, ON, Canada.
  • White, G. C., and Burnham, K. P., 1999. Program MARK: Survival estimation from populations of marked animals. Bird Study 46 (Supplement):S120-139.
  • Kendall, W. L., and J. E. Hines. 1999. Program RDSURVIV: An estimation tool for capture-recapture data collected under the Robust Design. Bird Study 46 (sup):32-38.
  • Carlson, P. C., W. S. Lahaye, and A. B. Franklin. 1998. Incestuous behavior in spotted owls. Wilson Bulletin 110:562-564
  • Helfman G. S., and D. L. Winkelman. 1997. Threat sensitivity in bicolor damselfish: effects of sociality an body size. Ethology 103:369-383.
  • Johnson, D. H., and W. L. Kendall. 1997. Modeling the population dynamics of Gulf Coast sandhill cranes. Proceedings of the Seventh North American Crane Workshop 7:173-180.
  • Kendall, W. L., D. H. Johnson, and S. C. Kohn. 1997. Subspecies composition of the harvest of sandhill cranes in North Dakota. Proceedings of the Seventh North American Crane Workshop 7:201-208.
  • Kendall, W. L., J. D. Nichols, and J. E. Hines. 1997. Estimating temporary
    emigration and breeding proportions using capture-recapture data with Pollock's Robust Design. Ecology 78:563-578.
  • Johnson, F.A., C.T. Moore, W.L. Kendall, J.A. Dubovsky, D.F. Caithamer, J.R. Kelley, Jr., and B.K. Williams. 1997. Uncertainty and the management of mallard harvests. Journal of Wildlife Management 61:202-216.  | Abstract |  Download  | 
  • Winkelman, D. L. 1996. Reproduction under Predatory threat: trade-offs between nest guarding and predator avoidance in male dollar sunfish (Lepomis marginatus). Copeia 1996 (4): 845-851.
  • Franklin, A. B., D. R. Anderson, E. D. Forsman, K. P. Burnham, and F. F. Wagner. 1996. Methods for collecting and analyzing demographic data on the northern spotted owl. Studies in Avian Biology 17:12-20.
  • Guti�rrez, R. J., E. D. Forsman, A. B. Franklin, and E. C. Meslow. 1996. History of demographic studies in the management of spotted owls. Studies in Avian Biology 17:6-11.
  • Kristan, D. M., R. J. Guti?rrez, and A. B. Franklin. 1996. Adaptive significance of growth patterns in juvenile spotted owls. Canadian Journal of Zoology 74:1882-1886.
  • Kristan, D. M., R. J. Guti�rrez, and A. B. Franklin. 1996. Adaptive significance of growth patterns in juvenile spotted owls. Canadian Journal of Zoology 74:1882-1886.
  • Raphael, M. G., R. G. Anthony, S. DeStefano, E. D. Forsman, A. B. Franklin, R. Holthausen, E. C. Meslow, and B. R. Noon. 1996. Use, interpretation, and implications of demographic analyses of northern spotted owl populations. Studies in Avian Biology 17:102-112.
  • Shenk, T. M., A. B. Franklin, and K. R. Wilson. 1996. A model to estimate the annual rate of golden eagle population change at the Altamont Pass Wind Resource Area, Pages 47-56 in LGL Environmental Research Associates, editors. Proceedings of the National Avian - Wind Power Planning Meeting II, Washington D. C.
  • Kendall, W. L., B. G. Peterjohn, and J. R. Sauer. 1996. First-time observer effects in the North American Breeding Bird Survey. Auk 113:823-829.
  • Forsman, E. D., A. B. Franklin, F. M. Oliver, and J. P. Ward. 1996. A color band for spotted owls. Journal of Field Ornithology 67:507-510.
  • Kendall, W. L., K. H. Pollock, and C. Brownie. 1995. A likelihood-based approach to capture-recapture estimation of demographic parameters under the Robust Design. Biometrics 51:293-308.
  • Franklin, A. B. 1995. The wisdom of the spotted owl: policy lessons for a new century by Steven Lewis Yaffee. Journal of Raptor Research 29:218-221.
  • Franklin, A. B., and T. M. Shenk. 1995. Meta-analysis as a tool for monitoring wildlife populations. Pages 484-487 In J. A. Bissonette and P. R. Krausman, editors. Integrating people and wildlife for a sustainable future. Proceedings of the International Wildlife Management Congress. The Wildlife Society, Bethesda, MD.
  • Guti�rrez, R. J., A. B. Franklin, and W. S. LaHaye. 1995. The spotted owl. The Birds of North America 179:1-28.
  • Hunter, J. E., R. J. Guti�rrez, and A. B. Franklin. 1995. Habitat configuration around spotted owl sites in northwestern California. Condor 97:684-693.
  • Keitt, T., A. B. Franklin, and D. Urban. 1995. Landscape analysis and metapopulation structure. Chapter 3 (16pp. ) in U. S. Fish and Wildlife Service. Mexican Spotted Owl Recovery Plan, Volume II. Albuquerque, New Mexico.
  • Ward, J. P., Jr, A. B. Franklin, S. E. Rinkevich, and F. Clemente. 1995. Distribution and abundance of Mexican spotted owls. Chapter 1 (14pp. ) in U. S. Fish and Wildlife Service. Mexican Spotted Owl Recovery Plan, Volume II. Albuquerque, New Mexico.
  • White, G. C., A. B. Franklin, and J. P. Ward, Jr. 1995. Population biology. Chapter 2 (25pp. ) in U. S. Fish and Wildlife Service. Mexican Spotted Owl Recovery Plan, Volume II. Albuquerque, New Mexico.
  • Nichols, J. D. and W. L. Kendall. 1995. The use of multistate capture-recapture models to address questions of evolutionary ecology. J. of Applied Statistics 22:835-846.
  • Kendall, W. L. and J. D. Nichols. 1995. On the use of secondary capture-recapture samples to estimate temporary emigration and breeding proportions. J. of Applied Statistics 22:751-762.
  • Drewien, R. C., W. M. Brown, and W. L. Kendall. 1995. Long-term recruitment in greater sandhill cranes of the Rocky Mountain population. J. of Wildlife Management 59(2):339-356.
  • Hunter, J. E., R. J. Guti�rrez, A. B. Franklin, and D. Olson. 1994. Ectoparasites of the spotted owl. Journal of Raptor Research 28:232-235.
  • Young, K. E., A. B. Franklin, and J. P. Ward. 1993. Infestation of northern spotted owls by hippoboscid flies. Journal of Wildlife Diseases 29(2): 278-283.
  • Winkelman, D. L., and J. Aho. 1993. Direct and indirect effects of predation on mosquitofish behavior and survival. Oecologia 96:300-303.
  • Johnson, F. H., B. K. Williams, J. D. Nichols, W. L. Kendall, J. E. Hines, G. W. Smith, and D. F. Caithamer. 1993. Developing an adaptive management strategy for harvesting waterfowl in North America. Transactions of the North American Wildlife and Natural Resources Conference.
  • Pollock, K. H., W. L. Kendall, and J. D. Nichols. 1993. The "robust" capture-recapture design allows components of recruitment to be estimated. Pages 245-254 in J.-D. Lebreton and Ph. M. North (eds.) Marked Individuals in the Study of Bird Population. Birkhauser Verlag, Basel, Switzerland. 397 pages.
  • Blakesley, J. A., A. B. Franklin and R. J. Guti�rrez. 1992. Spotted owl roost and nest site selection in northwest California. Journal of Wildlife Management 56:388-392.
  • Franklin, A. B. 1992. Population regulation in northern spotted owls: theoretical implications for management. Pages 815-827 In D. R. McCullough and R. J. Barrett, editors. Wildlife 2001: Populations. Elsevier Science Publications, London, England.
  • Kendall, W. L., and K. H. Pollock. 1992. The Robust Design in capture-recapture studies: a review and evaluation by Monte Carlo simulation. Pages 31-43 in Wildlife 2001: Populations, D. R. McCullough and R. H. Barrett (eds), Elsevier, London, UK.

  • Moen, C. A., A. B. Franklin and R. J. Guti?rrez. 1991. Age determination of subadult northern spotted owls in northwest California. Wildlife Society Bulletin 19:489-493.
  • Ward, J. P., A. B. Franklin and R. J. Guti?rrez. 1991. Estimating spotted owl abundance using search time and regression. Ecological Applications 1:207-214.
  • Ward, J. P., A. B. Franklin and R. J. Guti�rrez. 1991. Estimating spotted owl abundance using search time and regression. Ecological Applications 1:207-214.
  • Helfman, G. S., and D. L. Winkelman. 1991. Energy trade-offs and foraging mode choice in American eels. Ecology 72:310-318.
  • Winkelman, D. L., and G. L. Vinyard. 1991. The searching tactics of gyrinid beetles (Gyrinus picipes): empirical observations and a simulation model. Behavioral Ecology and Sociobiology 28:345-351.
  • Blakesley, J. A., A. B. Franklin and R. J. Guti�rrez. 1990. Sexual dimorphism in northern spotted owls from northwest California. Journal of Field Ornithology 61:95-112.
  • Franklin, A. B., J. P. Ward, R. J. Guti�rrez and G. I. Gould. 1990. Density of northern spotted owls in northwest California. Journal of Wildlife Management 54:1-10.
  • Franklin, A. B. 1988. Breeding biology of the Great Gray Owl in southeastern Idaho and northwestern Wyoming. Condor 90: 689-696.
  • Vinyard, G. L., R. Drenner, M. Gophen, U. Pollinger, D. L. Winkelman, and K. D. Hambright. 1988. An experimental study of the plankton community impacts of two omnivorous filter feeding cichlids, the Galilee Saint Peter's fish (Sarotherodon galilaeus) and Blue Tilapia (Tilapia aurea). Transactions of the American Fisheries Society, 45:685 690.
  • Gold, H. J., W. L. Kendall, and P. L. Shaffer. 1987. Nonlinearity and effects of
    microclimatic variability on a codling moth population (Cydia pomonella): a sensitivity simulation. Ecological Modelling 37:139-154.
  • Pollock, K. H., and W. L. Kendall. 1987. Visibility bias in aerial surveys: a review of estimation procedures. J. of Wildlife Management 51(2):502-510.
  • Guti�rrez, R. J., A. B. Franklin, B. LaHaye, V. Meretsky and P. Ward. 1985. Juvenile Spotted Owl dispersal in northwestern California: preliminary results. Pages 60-65 In R. J. Guti�rrez and A. B. Carey, editors. Ecology and management of Spotted Owls in the Pacific Northwest. U. S. Forest Service General Technical Report PNW_185.
  • Franklin, A. B., D. Clark and D. Clark. 1979. Ecology and behavior of the Galapagos Rail. Wilson Bulletin 91: 202_221.
 

Current Staff

Federal Staff: 3

Masters Students: 5

Phd Students: 2

Post Docs: 2

University Staff: 1

5 Year Summary

Students graduated: 18

Scientific Publications: 90

Presentations: 93

 

Colorado Cooperative Fish and Wildlife Research Unit Cooperators

  1. Colorado Parks and Wildlife
  2. Colorado State University
  3. U.S. Fish and Wildlife Service
  4. U.S. Geological Survey
  5. Wildlife Management Institute